species:   Fugra
pid:       PID0682
parent:    Fg-HN-milR47
paralog:   
locus:     CM000576.1:3313332-3313505
matures:   ['UCAGAACUCAGAAGACUCUGUA', 'CAGAGAUCUCUGGGUCUUGAU']
srr:       SRR3055827_1
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.AACM00000000.2_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wang2016-nz.SRR3055827_1.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wang2016-nz.SRR3055827_1.cram CM000576.1:3313332-3313505

0 out of bounds
9 alignments
9 proper strand
8 stranded perfect matches

        ************************                                                                                                               ***********************        
GAAUUUCGAGUCAGAACUCAGAAGACUCUGUAUAUCCGAACAGCCAGGGCAAGGGUAUCGCCUAUCCUGAAGGACCUAGUCAGUAACGAUGCCAUGCUGAUUACAGGUUAGUCUCCCGGAUCAACCAGCUUGAUCAGGUUAAUUCCAGAGAUCUCUGGGUCUUGAUCGUGCCAU
......(((.((((.(((((((.(((((((..............(((((..(((......))).)))))...(((((((((((((.........))))))))..)))))......((.((((((.....)))))).)).......))))).))))))))).)))))))......
----------UCAGAACUCAGAAGACUCUGUA---------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=5 c
-------------------------------------------------------------------------------------------------------------------------------------------------CAGAGAUCUCUGGGUCUUGAU-------- l=21 a=0 c*
----------UCAGAACUCAGAAGACUCUGUA---------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=5 ma
-------------------------------------------------------------------------------------------------------------------------------------------------CAGAGAUCUCUGGGUCUUGAU-------- l=21 a=0 ma*

----------UCAGAACUCAGAAGACUCUG------------------------------------------------------------------------------------------------------------------------------------------------ l=20 a=1 
----------UCAGAACUCAGAAGACUCUGUA---------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=5 (c,ma)
-----------CAGAACUCAGAAGACUCUGU----------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
-------------------------------------------------------------------UGAAGGACCUAGUCAGUAACGA------------------------------------------------------------------------------------- l=22 a=1 
-----------------------------------------------------------------------------AGUCAGUAACGAUGCCAUGCUGAa------------------------------------------------------------------------- l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111110
fn-111
